Trees identified using more extensive taxon sample in Dias et al. (2003) Contents: 1. Nexus file containing aligned sequences 2. Weighted neighbor joining tree 3. Weighted neighbor joining bootstrap tree 4. Majority rule consensus of trees sampled by MrBayes 2.01 (modified to use the WAG model) 5. References -------- 1. Nexus file (cut and paste material from #NEXUS to End; in order to execute. #NEXUS [ Unless otherwise noted, all sequences are from Arabidopsis. ] [ Sequences from other taxa begin with: ] [ Am=snapdragon; Chre=Chlamydomonas reinhardtii; Os=rice; ] [ Pehy=petunia; Phpa=Physcomitrella patens; Zm=maize. ] [ PCMYB designates 3 repeat mybs (Braun and Grotewold 1999) ] [ Arabidopsis open reading frames designated starting with AT ] Begin data; Dimensions ntax=127 nchar=110; Format datatype=protein gap=-; Matrix [ 10 20 30 40 50 60 70 80 90 100 110] [ . . . . . . . . . . .] PCMYB1 KGPWSKEEDNTIIDLVEKYGPK-------KWSTISQHLP-GRIGKQCRERWHNHLNPGIN-KNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKK PCMYB2 KGAWKKEEDELLSELVKDYMEN----DRPPWSKISKELP-GRIGKQCRERWHNHLNPTII-KSPWTREEELILVQAQRGNGNKWAEIAKLLPGRTENNIKNHWNCSVKKR PCMYB3 KGPWTHEEDEKIVELVEKYGPA-------KWSIIAQSLP-GRIGKQCRERWHNHLNPDIN-KDAWTTEEEVALMNAHRSHGNKWAEIAKVLPGRTDNAIKNHWNSSLKKK PCMYB4 KGPWTKEEDEMIVQLIEKYGPK-------KWSTIARFLP-GRIGKQCRERWHNHLNPAIN-KEAWTQEEELLLIRAHQIYGNRWAELTKFLPGRSDNGIKNHWHSSVKKK PCMYB5 KGPWTQEEDDKIVELVKKYGPA-------KWSVIAKSLP-GRIGKQCRERWHNHLNPGIR-KDAWTVEEESALMNSHRMYGNKWAEIAKVLPGRTDNAIKNHWNSSLKKK PhpaPCMYB KGAWTKEEDDRIMELVNKYGAK-------KWSVIAQNLP-GRIGKQCRERWHNHLNPSIK-REAWTQQEDLALIRAHQLYGNKWAEIAKFLPGRTDNSIKNHWNSTMKKK ChreMYB RGPWTPEEDKQLTDLVLSCGAQ-------RWSTIAESIP-GRSGKSCRLRWWNHLSPQVK-KGPFSDFEDAVIVRSHEKYGNKWSVIAKLLPGRTDNAVKNRWNSTLKRK PhpaMYB2 RGPWTSEEDQKLVSHITNNGLS-------CWRAIPKLAGLLRCGKSCRLRWTNYLRPDLK-RGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKR AT5G55020 KGPWTAAEDEILAAYVRENGEG-------NWNAVQKNTGLARCGKSCRLRWANHLRPNLK-KGSFTGDEERLIIQLHAQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRL AT4G26930 KGPWTVAEDETLAAYVREYGEG-------NWNSVQKKTWLARCGKSCRLRWANHLRPNLR-KGSFTPEEERLIIQLHSQLGNKWARMAAQLPGRTDNEIKNYWNTRLKRF AT5G06100 KGPWSSAEDDILIDYVNKHGEG-------NWNAVQKHTSLFRCGKSCRLRWANHLRPNLK-KGAFSQEEEQLIVELHAKMGNRWARMAAHLPGRTDNEIKNYWNTRIKRR AT3G11440 KGPWTSTEDGILIDYVKKHGEG-------NWNAVQKHTSLARCGKSCRLRWANHLRPNLK-KGAFSQEEEQLIVEMHAKMGNKWAQMAEHLPGRTDNEIKNYWNTRIKRR AT2G26960 KGPWTQAEDNLLIAYVDKHGDG-------NWNAVQNNSGLSRCGKSCRLRWVNHLRPDLK-KGAFTEKEEKRVIELHALLGNKWARMAEELPGRTDNEIKNFWNTRLKRL AT2G26950 KSKWKPEEDRILKDYVIQYGDR-------TWTHVPKRTGLPHNPASCRFRWMNHLKPSLK-KGPFTDEEEKRVLQLHAVLGNKWSQMAREFPGRTDNEIKNFWNARRMRL AT5G12870 KGLWSPEEDSKLMQYMLSNGQG-------CWSDVAKNAGLQRCGKSCRLRWINYLRPDLK-RGAFSPQEEDLIIRFHSILGNRWSQIAARLPGRTDNEIKNFWNSTIKKR AT1G63910 RGLWSPEEDEKLIRYITTHGYG-------CWSEVPEKAGLQRCGKSCRLRWINYLRPDIR-RGRFSPEEEKLIISLHGVVGNRWAHIASHLPGRTDNEIKNYWNSWIKKK AT5G52260 KGLWSPEEDQKLKSFILSRGHA-------CWTTVPILAGLQRNGKSCRLRWINYLRPGLK-RGSFSEEEEETILTLHSSLGNKWSRIAKYLPGRTDNEIKNYWHSYLKKR AT4G01680 KGLWSPEEDEKLLRYITKYGHG-------CWSSVPKQAGLQRCGKSCRLRWINYLRPDLK-RGAFSQDEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKK AT5G26655 KGLWSPEEDEKLLNYITRHGHG-------CWSSVPKLAGLQRCGKSCRLRWINYLRPDLK-RGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKK AT3G12720 RGLWSPEEDEKLLRYITTHGHP-------SWSSVPKLAGLQRCGKSCRLRWINYLRPDLR-RGSFNEEEEQIIIDVHRILGNKWAQIAKHLPGRTDNEVKNFWNSCIKKK AT5G14750 KGLWTVEEDKILMDYVKAHGKG-------HWNRIAKKTGLKRCGKSCRLRWMNYLSPNVK-RGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK AT3G47600 KGPWTPEEDIILVSYIQEHGPG-------NWRSVPTHTGLRRCSKSCRLRWTNYLRPGIK-RGNFTEHEEKMILHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKK AT5G62470 KGPWTPEEDIILVSYIQEHGPG-------NWRSVPTHTG-LRCSKSCRLRWTNYLRPGIK-RGNFTEHEEKTIVHLQALLGNRWAAIASYLPERTDNDIKNYWNTHLKKK AT1G74650 KGPWTPEEDIILVSYIQQHGPG-------NWRSVPANTGLLRCSKSCRLRWTNYLRPGIK-RGNFTQPEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK AT1G66380 KGAWTAEEDSLLRQCIGKYGEG-------KWHQVPLRAGLNRCRKSCRLRWLNYLKPSIK-RGKFSSDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK AT1G66370 KGTWTTEEDILLRQCIDKYGEG-------KWHRVPLRTGLNRCRKSCRLRWLNYLKPSIK-RGKLCSDEVDLVLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK AtMYB123 RGAWTDHEDKILRDYITTHGEG-------KWSTLPNQAGLKRCGKSCRLRWKNYLRPGIK-RGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKR AT2G16720 KGAWTKEEDERLVSYIKSHGEG-------CWRSLPRAAGLLRCGKSCRLRWINYLRPDLK-RGNFTHDEDELIIKLHSLLGNKWSLIAARLPGRTDNEIKNYWNTHIKRK AT4G34990 KGAWTKEEDDKLISYIKAHGEG-------CWRSLPRSAGLQRCGKSCRLRWINYLRPDLK-RGNFTLEEDDLIIKLHSLLGNKWSLIATRLPGRTDNEIKNYWNTHVKRK AT4G38620 KGAWTKEEDERLVAYIKAHGEG-------CWRSLPKAAGLLRCGKSCRLRWINYLRPDLK-RGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRK AT3G02940 KGPWTPEEDQKLINHIRKHGHG-------SWRALPKQAGLNRCGKSCRLRWTNYLRPDIK-RGNFTAEEEQTIINLHSLLGNKWSSIAGHLPGRTDNEIKNYWNTHIRKK AT5G16770 KGPWTQEEDDKLIDHIQKHGHG-------SWRALPKQAGLNRCGKSCRLRWTNYLRPDIK-RGNFTEEEEQTIINLHSLLGNKWSSIAGNLPGRTDNEIKNYWNTHLRKK AT4G28110 KGPWTAEEDQKLIDYIRFHGPG-------NWRTLPKNAGLHRCGKSCRLRWTNYLRPDIK-RGRFSFEEEETIIQLHSVMGNKWSAIAARLPGRTDNEIKNHWNTHIRKR AT5G54230 KGPWTPEEDEKLVGYIQTHGPG-------KWRTLPKNAGLKRCGKSCRLRWTNYLRPDIK-RGEFSLQEEETIIQLHRLLGNKWSAIAIHLPGRTDNEIKNYWNTHIKKK AT5G10280 KGPWTPDEDEKLVNYVQKHGHS-------SWRALPKLAGLNRCGKSCRLRWTNYLRPDIK-RGRFSPDEEQTILNLHSVLGNKWSTIANQLPGRTDNEIKNFWNTHLKKK AT1G34670 KGPWTPEEDQKLIDYIHKHGHG-------SWRALPKLAGLNRCGKSCRLRWTNYLRPDIK-RGKFSAEEEQTILHLHSILGNRWSAIATHLQGRTDNEIKNFWNTHLKKK AT3G61250 KGPWTPEEDEVLVAHIKKNGHG-------SWRTLPKLAGLLRCGKSCRLRWTNYLRPDIK-RGPFTADEEKLVIQLHAILGNRWAAIAAQLPGRTDNEIKNLWNTHLKKR AT3G13540 RGPWTVEEDEILVSFIKKEGEG-------RWRSLPKRAGLLRCGKSCRLRWMNYLRPSVK-RGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKK AT5G14340 RGPWTIEEDHRLMNFILNNGIH-------CWRIVPKLAGLLRCGKSCRLRWINYLRPDLK-RGGFTDAEEDRIMELHSQLGNRWSKIASHFSGRTDNEIKNHWNTKIKKK AT5G16600 KGPWTIEEDKKLINFILTNGHC-------CWRALPKLSGLLRCGKSCRLRWINYLRPDLK-RGLLSEYEEQKVINLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKK AT5G62320 KGPWTVEEDGKLVDFLRARGNCGGGGGGWCWRDVPKLAGLRRCGKSCRLRWTNYLRPDLK-RGLFTEEEIQLVIDLHARLGNRWSKIAVELPGRTDNDIKNYWNTHIKRK AT2G31180 RGPWTPEEDQILINYIHLYGHS-------NWRALPKHAGLLRCGKSCRLRWINYLRPDIK-RGNFTPQEEQTIINLHESLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR AT3G23250 RGPWTPEEDQILVSFILNHGHS-------NWRALPKQAGLLRCGKSCRLRWMNYLKPDIK-RGNFTKEEEDAIISLHQILGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR AT1G79180 RGPWSPEEDIKLISFIQKFGHE-------NWRSLPKQSGLLRCGKSCRLRWINYLRPDLK-RGNFTSEEEETIIKLHHNYGNKWSKIASQLPGRTDNEIKNVWHTHLKKR AT3G12820 RGPWSDEESERLRSFILKNGHQ-------NWRSLPKLAGLMRCGKSCRLRWINYLRPGLK-RGNFTKEEEDTIIHLHQAYGNKWSKIASNFPGRTDNEIKNVWNTHLKKR AT1G18570 KGAWTPEEDQKLLSYLNRHGEG-------GWRTLPEKAGLKRCGKSCRLRWANYLRPDIK-RGEFTEDEERSIISLHALHGNKWSAIARGLPGRTDNEIKNYWNTHIKKR AT1G74080 KGAWTQEEDQKLIAYVQRHGEG-------GWRTLPDKAGLKRCGKSCRLRWANYLRPDIK-RGEFSQDEEDSIINLHAIHGNKWSAIARKIPRRTDNEIKNHWNTHIKKC AT3G28470 KGLWTEEEDAKILAYVAIHGVG-------NWSLIPKKAGLNRCGKSCRLRWTNYLRPDLK-HDSFSTQEEELIIECHRAIGSRWSSIARKLPGRTDNDVKNHWNTKLKKK AT5G07700 KGAWTTEEDKKLISYIHDHGEG-------GWRDIPEKAGLKRCGKSCRLRWTNYLKPDIK-RGEFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEVKNYWNTHLKKR AT5G61420 KGAWTTEEDKKLISYIHDHGEG-------GWRDIPQKAGLKRCGKSCRLRWTNYLKPEIK-RGEFSSEEEQIIIMLHASRGNKWSVIARHLPRRTDNEIKNYWNTHLKKR AT1G74430 KGEWTAEEDRKLVVYINEHGLG-------EWGSLPKRAGLQRCGKSCRLRWLNYLRPGIK-RGKFTPQEEEEIIKYHALLGNRWAAIAKQMPNRTDNDIKNHWNSCLKKR AT1G18710 KGEWTAEEDQKLGAYINEHGVC-------DWRSLPKRAGLQRCGKSCRLRWLNYLKPGIR-RGKFTPQEEEEIIQLHAVLGNRWAAMAKKMQNRTDNDIKNHWNSCLKKR AT5G23000 RGPWSPEEDSKLRDYIEKYGNGG------NWISFPLKAGLRRCGKSCRLRWLNYLRPNIK-HGDFSEEEDRIIFSLFAAIGSRWSIIAAHLPGRTDNDIKNYWNTKLRKK AT2G36890 RGPWSPEEDAKLKDYIEKQGTGG------NWIALPHKAGLRRCGKSCRLRWLNYLRPNIR-HGDFTEEEDNIIYSLFASIGSRWSVIAAHLQGRTDNDIKNYWNTKLKKK AT3G49690 KGPWSPEEDAKLKSYIENSGTGG------NWIALPQKIGLKRCGKSCRLRWLNYLRPNIK-HGGFSEEEENIICSLYLTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK AT5G65790 KGPWSPEEDAKLKDYIENSGTGG------NWIALPQKIGLRRCGKSCRLRWLNYLRPNIK-HGGFSEEEDNIICNLYVTIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKK AT5G56110 RGQWTPEEDNKLASYIAQHGTR-------NWRLIPKNAGLQRCGKSCRLRWTNYLRPDLK-HGQFSEAEEHIIVKFHSVLGNRWSLIAAQLPGRTDNDVKNYWNTKLKKK AT3G06490 RGPWTAEEDFKLMNYIATNGEG-------RWNSLSRCAGLQRTGKSCRLRWLNYLRPDVR-RGNITLEEQLLILELHSRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH AT5G49620 RGPWTVEEDLELINYIASHGEG-------RWNSLARCAELKRTGKSCRLRWLNYLRPDVR-RGNITLEEQLLILELHTRWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKH AT1G48000 RGPWTVEEDMKLVSYISLHGEG-------RWNSLSRSAGLNRTGKSCRLRWLNYLRPDIR-RGDISLQEQFIILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVQKH AT1G68320 RGPWTLEEDTLLTNYILHNGEG-------RWNHVAKCAGLKRTGKSCRLRWLNYLKPDIR-RGNLTPQEQLLILELHSKWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQ AT1G25340 KGPWTLEEDTLLTNYISHNGEG-------RWNLLAKSS?????GKSCRLRWLNYLKPDIK-RGNLTPQEQLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRTRVQKQ AT3G01530 KGPWTMEEDFILFNYILNHGEG-------LWNSVAKASGLKRTGKSCRLRWLNYLRPDVR-RGNITEEEQLLIIQLHAKLGNRWSKIAKHLPGRTDNEIKNFWRTKIQRH AT4G13480 KGPWTAEEDRLLIEYVRVHGEG-------RWNSVSKLAGLKRNGKSCRLRWVNYLRPDLK-RGQITPHEESIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKKK AT3G24310 KGPWTAEEDRLLIDYVQLHGEG-------RWNSVARLAGLKRNGKSCRLRWVNYLRPDLK-RGQITPHEETIILELHAKWGNRWSTIARSLPGRTDNEIKNYWRTHFKKK AT3G30210 KGPWTLEEDKLLAEYVTSHGEG-------RWSTVAKCAGLNRSGKSCRLRWVNYLRPGLK-RGQITPQEEGIILELHSLWGNKWSTIARYLPGRTDNEIKNYWRTHYKKN AT3G46130 KGPWTEQEDILLVNFVHLFGDR-------RWDFIAKVSGLNRTGKSCRLRWVNYLHPGLK-RGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK AT5G59780 KGPWTEQEDILLVNFVHLFGDR-------RWDFVAKVSGLNRTGKSCRLRWVNYLHPGLK-RGKMTPQEERLVLELHAKWGNRWSKIARKLPGRTDNEIKNYWRTHMRKK AT1G14350 IVTWSQEEDVILREQITLHGTE-------NWAIIASKFK-DKSTRQCRRRWYTYLNSDFK-RGGWSPEEDMLLCEAQRVFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKR AT2G02820 IVTWSPEEDDILRKQISLQGTE-------NWAIIASKFN-DKSTRQCRRRWYTYLNSDFK-RGGWSPEEDTLLCEAQRLFGNRWTEIAKVVSGRTDNAVKNRFTTLCKKR AT2G39880 KGPWLPEQDEALTRLVKMCGPR-------NWNLISRGIP-GRSGKSCRLRWCNQLDPILK-RKPFSDEEEHMIMSAQAVLGNKWSVIAKLLPGRTDNAIKNHWNSNLRRK AT3G55730 KGPWSTEEDAVLTKLVRKLGPR-------NWSLIARGIP-GRSGKSCRLRWCNQLDPCLK-RKPFSDEEDRMIISAHAVHGNKWAVIAKLLTGRTDNAIKNHWNSTLRRK AT3G50060 KGPWSQEEDEQLRRMVEKYGPR-------NWSAISKSIP-GRSGKSCRLRWCNQLSPEVE-HRPFSPEEDETIVTARAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK AT2G23290 KGPWSPEEDDLLQSLVQKHGPR-------NWSLISKSIP-GRSGKSCRLRWCNQLSPEVE-HRGFTAEEDDTIILAHARFGNKWATIARLLNGRTDNAIKNHWNSTLKRK AT5G40360 KGQWTPTEDELLVRMVKSKGTK-------NWTSIAKMFQ-GRVGKQCRERWHNHLRPNIK-KNDWSEEEDQILIEVHKIVGNKWTEIAKRLPGRSENIVKNHWNATKRRL AT3G27780 KGQWTPEEDKLLVQLVDLHGTK-------KWSQIAKMLQ-GRVGKQCRERWHNHLRPDIK-KDGWTEEEDIILIKAHKEIGNRWAEIARKLPGRTENTIKNHWNATKRRQ AT5G58850 KGQWTAEEDRKLIRLVRQHGER-------KWAMISEKLE-GRAGKQCRERWHNHLRPDIK?KDGWSEEEERVLVESHMRIGNKWAEIAKLIPGRTENSIKNHWNATKRRQ AT5G11050 KGQWTADEDRKLIKLVMQHGER-------KWAVISEKLE-GRAGKQCRERWHNHLRPDIK-KDSWSEEEERLLVEAHTRIGNKWAEIAKLIQGRTENSIKNHWNATKRRQ AT1G73410 RGHWRPAEDEKLKDLVEQYGPH-------NWNAIALKLP-GRSGKSCRLRWFNQLDPRIN-RNPFTEEEEERLLAAHRIHGNRWSIIARLFPGRTDNAVKNHWHVIMARR AT1G26780 RGHWRPAEDVKLKELVSIYGPQ-------NWNLIAEKLQ-GRSGKSCRLRWFNQLDPRIN-RRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVVMARK AT1G69560 RGHWRPAEDTKLKELVAVYGPQ-------NWNLIAEKLQ-GRSGKSCRLRWFNQLDPRIN-RRAFTEEEEERLMQAHRLYGNKWAMIARLFPGRTDNSVKNHWHVIMARK AT4G33450 RGHWRPVEDDNLRQLVEQYGPK-------NWNFIAQHLY-GRSGKSCRLRWYNQLDPNIT-KKPFTEEEEERLLKAHRIQGNRWASIARLFPGRTDNAVKNHFHVIMARR AT5G49330 RGRWTAEEDEILTKYIQTNGEG-------SWRSLPKKAGLLRCGKSCRLRWINYLRRDLK-RGNITSDEEEIIVKLHSLLGNRWSLIATHLPGRTDNEIKNYWNSHLSRK AT3G08500 KGLWSPDEDEKLIRYMLTNGQG-------CWSDIARNAGLLRCGKSCRLRWINYLRPDLK-RGSFSPQEEDLIFHLHSILGNRWSQIATRLPGRTDNEIKNFWNSTLKKR AT4G37780 KGPWSTEEDAVLKSYIEKHGTGN------NWISLPQRIGIKRCGKSCRLRWLNYLRPNLK-HGGFTDEEDYIICSLYITIGSRWSIIASQLPGRTDNDIKNYWNTRLKKK AT3G48920 KGLWSPEEDEKLRSHVLKYGHG-------CWSTIPLQAGLQRNGKSCRLRWVNYLRPGLK-KSLFTKQEETILLSLHSMLGNKWSQISKFLPGRTDNEIKNYWHSNLKKG AT3G53200 RGPWLEEEDERLVKVISLLGER-------RWDSLAIVSGLKRSGKSCRLRWMNYLNPTLK-RGPMSQEEERIIFQLHALWGNKWSKIARRLPGRTDNEIKNYWRTHYRKK AT3G60460 KGPWKAEEDEVLINHVKRYGPR-------DWSSIRSKGLLQRTGKSCRLRWVNKLRPNLKNGCKFSADEERTVIELQSEFGNKWARIATYLPGRTDNDVKNFWSSRQKRL AT2G25230 KVNWTESEDIKLKEIMALGPKN-------KWTKVAKKFE-GRTGKQCRERWYNHARPNIK-KTAWSEEEDQILIEAHKVLGTKWVEIAQQLPGRSDNNIKNHWNTTKRRV AT4G18770 KGQWTAEEDRVLIQLVEKYGLR-------KWSHIAQVLP-GRIGKQCRERWHNHLRPDIK-KETWSEEEDRVLIEFHKEIGNKWAEIAKRLPGRTENSIKNHWNATKRRQ AtMYB1 KGPWSKEEDDVLSELVKRLGAR-------NWSFIARSIP-GRSGKSCRLRWCNQLNPNLI-RNSFTEVEDQAIIAAHAIHGNKWAVIAKLLPGRTDNAIKNHWNSALRRR AtMYB22 KKRWTESEDIKLKEMVALEP-K-------KWTKVAKHFE-GRTPKQCRERWHNHARPNVK-KTTWSEEEDQILIEVHKVIGAKWIQISEQLPGRSYNNVKNHWNTTKRRV AtMYB44 KGPWSPEEDEQLRRLVVKYGPR-------NWTVISKSIP-GRSGKSCRLRWCNQLSPQVE-HRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRK AtMYB52 RGHWRPAEDEKLRELVEQFGPH-------NWNAIAQKLS-GRSGKSCRLRWFNQLDPRIN-RNPFTEEEEERLLASHRIHGNRWSVIARFFPGRTDNAVKNHWHVIMARR AtMYB20 KGPWTAEEDRKLINFILTNGQC-------CWRAVPKLSGLLRCGKSCRLRWTNYLRPDLK-RGLLSDYEEKMVIDLHSQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKK AtMYB3 KGAWTKEEDQLLVDYIRKHGEG-------CWRSLPRAAGLQRCGKSCRLRWMNYLRPDLK-RGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKRK AtGL1 KGLWTVEEDNILMDYVLNHGTG-------QWNRIVRKTGLKRCGKSCRLRWMNYLSPNVN-KGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK AtMYB118 KGPWTMEEDLILINYIANHGDG-------VWNSLAKSAGLKRTGKSCRLRWLNYLRPDVR-RGNITPEEQLIIMELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKY AtMYB53 KGPWLPEEDDKLINYIHKHGHS-------SWSALPKLAGLNRCGKSCRLRWTNYLRPDIK-RGKFSAEEEETILNLHAVLGNKWSMIASHLPGRTDNEIKNFWNTHLKKK AtMYB29 KGAWTAEEDKKLISYIHEHGEG-------GWRDIPQKAGLKRCGKSCRLRWANYLKPDIK-RGEFSYEEEQIIIMLHASRGNKWSVIARHLPKRTDNEIKNYWNTHLKKL AtMYB36 KGPWSPEEDVKLKDYIDKYGTGG------NWIALPQKIGLKRCGKSCRLRWLNYLRPNIK-HGGFSEEEDRIILSLYISIGSRWSIIAAQLPGRTDNDIKNYWNTKLKKK AtMYB30 KGPWTPEEDIILVTYIQEHGPG-------NWRAVPTNTGLLRCSKSCRLRWTNYLRPGIK-RGNFTEHEEKMIVHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKK AtMYB61 KGLWSPEEDEKLLTHITNHGHG-------CWSSVPKLAGLQRCGKSCRLRWINYLRPDLK-RGAFSPEEENLIVELHAVLGNRWSQIASRLPGRTDNEIKNLWNSSIKKK AtMYB18 KGLWSPEEDEKLRSFILSYGHS-------CWTTVPIKAGLQRNGKSCRLRWINYLRPGLK-RDMISAEEEETILTFHSSLGNKWSQIAKFLPGRTDNEIKNYWHSHLKKK AtMYB13 KGPWSAEEDRILINYISLHGHP-------NWRALPKLAGLLRCGKSCRLRWINYLRPDIK-RGNFTPHEEDTIISLHQLLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKR AtMYB101 KGPWTTTEDAILTEYVRKHGEG-------NWNAVQKNSGLLRCGKSCRLRWANHLRPNLK-KGSFTPDEEKIIIDLHAKLGNKWARMASQLPGRTDNEIKNYWNTRMKRR AtMYB2 KGPWTEEEDAILVNFVSIHGDA-------RWNHIARSSGLKRTGKSCRLRWLNYLRPDVR-RGNITLEEQFMILKLHSLWGNRWSKIAQYLPGRTDNEIKNYWRTRVQKQ AtMYB102 KGPWTSEEDQKLVDYIQKHGYG-------NWRTLPKNAGLQRCGKSCRLRWTNYLRPDIK-RGRFSFEEEETIIQLHSFLGNKWSAIAARLPGRTDNEIKNFWNTHIRKK AtMYB39 KGPWLPEEDDKLTAYINENGYG-------NWRSLPKLAGLNRCGKSCRLRWMNYLRPDIR-RGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKK AtMYB58 RGPWSHDEDLKLISFIHKNGHE-------NWRSLPKQAGLLRCGKSCRLRWINYLRPDVK-RGNFSAEEEDTIIKLHQSFGNKWSKIASKLPGRTDNEIKNVWHTHLKKR AtMYB75 KGAWTTEEDSLLRQCINKYGEG-------KWHQVPVRAGLNRCRKSCRLRWLNYLKPSIK-RGKLSSDEVDLLLRLHRLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK AtMYB90 KGAWTAEEDSLLRLCIDKYGEG-------KWHQVPLRAGLNRCRKSCRLRWLNYLKPSIK-RGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKK PehyAN2 KGAWTEEEDLLLRECIDKYGEG-------KWHLVPVRAGLNRCRKSCRLRWLNYLRPHIK-RGDFSLDEVDLILRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLRKK ZmC1 RGAWTSKEDDALAAYVKAHGEG-------KWREVPQKAGLRRCGKSCRLRWLNYLRPNIR-RGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRR ZmPL1 RGAWTAKEDDTLAAYVKAHGEG-------KWREVPQKAGLRRCGKSCRLRWLNYLRPNIK-RGNISYDEEDLIVRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRR AtMYB16 KGPWTPEEDQKLLAYIEEHGHG-------SWRSLPEKAGLHRCGKSCRLRWTNYLRPDIK-RGKFNLQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR AtMYB106 KGPWTPEEDQKLLAYIEEHGHG-------SWRSLPEKAGLQRCGKSCRLRWTNYLRPDIK-RGKFTVQEEQTIIQLHALLGNRWSAIATHLPKRTDNEIKNYWNTHLKKR AmMIXTA KGPWTVDEDQKLLAYIEEHGHG-------SWRSLPLKAGLQRCGKSCRLRWANYLRPDIK-RGPFSLQEEQTIIQLHALLGNRWSAIASHLPKRTDNEIKNYWNTHLKKR ZmB2 KGPWTQEEDEKLLHYIQKNGHG-------SWRTLPRLAGLNRCGKSCRLRWTNYLRPDIK-RGKFSQEEEQTILHLHSVLGNKWSAIATHLPGRTDNEIKNFWNTHLKKR AtMYB12 RGRWTAEEDQILSNYIQSNGEG-------SWRSLPKNAGLKRCGKSCRLRWINYLRSDLK-RGNITPEEEELVVKLHSTLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRK AtMYB11 KGRWTAEEDRTLSDYIQSNGEG-------SWRSLPKNAGLKRCGKSCRLRWINYLRSDIK-RGNITPEEEDVIVKLHSTLGTRWSTIASNLPGRTDNEIKNYWNSHLSRK ZmP1 RGRWTAEEDQLLANYIAEHGEG-------SWRSLPKNAGLLRCGKSCRLRWINYLRADVK-RGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ ZmP2 RGRWTAEEDQLLANYIAEHGEG-------SWRSLPKNAGLLRCGKSCRLRWINYLRADVK-RGNISKEEEDIIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ OsP RGRWTTEEDEKLAGYIAKHGEG-------SWRSLPKNAGLLRCGKSCRLRWINYLRAGVK-RGNISNQEEDVIIKLHATLGNRWSLIASHLPGRTDNEIKNYWNSHLSRQ ZmIF25 KGRWTREEDEILARYIEEHGEG-------SWRSLPKNAGLLRCGKSCRLRWINYLRAGLK-RGNITEEEEDVIVKLHATLGNRWSLIAGHLPGRTDNEIKNHWNSHLRRR ZmIF35 KGRWTKEEDEVLARYIKEHGEG-------SWRSLPKNAGLLRCGKSCRLRWINYLRAGLK-RGNISEEEEDMIIKLHATLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRR OsIF RGRWTKEEDEKLARYIRENGEG-------AWRSMPKNAGLLRCGKSCRLRWINYLRADLK-RGNISPQEEDIILNLHATLGNRWSLIAGHLPGRTDNEIKNYWNSHLSRK ; End; 2. Tree identified by weighted neighbor joining (Bruno et al. 2000) of distances calculated assuming the WAG model of sequence evolution (Whelan and Goldman 2001) ((((AT4G34990:0.071112,(AtMYB3:0.054191,(AT4G38620:0.036246, AT2G16720:0.040134):0.015228):0.012449):0.104007,(((AT5G49330:0.086659, (AtMYB12:0.050651,AtMYB11:0.080389):0.035348):0.030625,(((ZmP1:0.000000, ZmP2:0.000000):0.038773,OsP:0.058937):0.033583,((ZmIF25:0.053571, ZmIF35:0.032879):0.033600,OsIF:0.093967):0.005506):0.047215):0.094068, ((AtGL1:0.083735,AT5G14750:0.011645):0.268989,(AT3G13540:0.175205, (((ZmPL1:0.017501,ZmC1:0.034819):0.161928,AtMYB123:0.165956):0.020243, (PehyAN2:0.061085,((AtMYB90:0.040475,AT1G66380:0.010782):0.010046, (AT1G66370:0.076045, AtMYB75:0.024785):0.004829):0.063780):0.281861):0.046196):0.013577):0.054047) :0.009111):0.059338,(((((AT1G25340:0.061203,AT1G68320:0.053107):0.104094, (AtMYB2:0.166886,((AT5G49620:0.071024,AT3G06490:0.037426):0.054566, AT1G48000:0.087907):0.024362):0.012975):0.048976,(AT3G01530:0.100984, AtMYB118:0.084646):0.055463):0.119082,(((AT3G24310:0.032775, AT4G13480:0.029535):0.080929,AT3G30210:0.157049):0.025152,((AT5G59780:0.004027, AT3G46130:0.005853):0.203662,AT3G53200:0.257285):0.118765):0.065528):0.136205, (((AT2G26950:0.586271,AT2G26960:0.159104):0.058499,((AT3G11440:0.052827, AT5G06100:0.040383):0.119679,(AtMYB101:0.093292,(AT4G26930:0.083500, AT5G55020:0.036070):0.084576):0.020232):0.014857):0.104599,(AT3G60460:0.559732, (((((AT1G69560:0.012988,AT1G26780:0.026802):0.140910,(AT4G33450:0.202754, (AT1G73410:0.042775,AtMYB52:0.040785):0.020627):0.039409):0.439761, ((AT2G23290:0.074386,(AtMYB44:0.058111,AT3G50060:0.047969):0.074442):0.147387, ((AT3G55730:0.120025,AT2G39880:0.127545):0.074800, AtMYB1:0.191210):0.083967):0.041849):0.033325,ChreMYB:0.335471):0.095139, ((AT2G02820:0.033486,AT1G14350:0.050914):1.086082,(((AT4G18770:0.145415, (AT5G11050:0.064536,AT5G58850:0.028634):0.135154):0.042068,(AT3G27780:0.130983, ((AtMYB22:0.211312,AT2G25230:0.030298):0.455690, AT5G40360:0.140760):0.104944):0.054753):0.163767,((PCMYB5:0.061499, PCMYB3:0.073661):0.061944,(PhpaPCMYB:0.115592,(PCMYB2:0.417532,(PCMYB4:0.106387, PCMYB1:0.085733):0.104387):0.006105):0.070424):0.166684):0.051773):0.160393) :0.318293):0.099629):0.080625):0.068266):0.015505,((((AT5G62320:0.242177, ((AtMYB20:0.055914,AT5G16600:0.055526):0.073552, AT5G14340:0.216071):0.049598):0.049504,PhpaMYB2:0.159727):0.065029, (((AT3G08500:0.086571,AT5G12870:0.071239):0.125008,(AT3G48920:0.226708, (AT5G52260:0.057616,AtMYB18:0.107174):0.058160):0.177494):0.008006, ((AT3G12720:0.171639,AT1G63910:0.156651):0.040399,((AT5G26655:0.051913, AT4G01680:0.047067):0.010771, AtMYB61:0.074797):0.041402):0.032910):0.093074):0.015805,((AT3G28470:0.316843, AT5G56110:0.164687):0.040675,((AtMYB36:0.059090,(AT4G37780:0.136942, (AT5G65790:0.031004,AT3G49690:0.021536):0.023938):0.016078):0.049230, (AT2G36890:0.093066,AT5G23000:0.083874):0.036091):0.237593):0.084207):0.017242, (((AtMYB39:0.210065,((AT5G16770:0.041928,AT3G02940:0.033422):0.062588, ((AT1G34670:0.062810,ZmB2:0.081330):0.009659,(AT5G10280:0.084808, AtMYB53:0.079632):0.018766):0.035027):0.016128):0.019032,((AT5G54230:0.094632, (AtMYB102:0.038209,AT4G28110:0.075291):0.054157):0.047155,(((AtMYB29:0.039058, (AT5G61420:0.019636,AT5G07700:0.030374):0.005370):0.141501,(AT1G74080:0.130577, AT1G18570:0.065733):0.081916):0.068918,((AT1G18710:0.115768, AT1G74430:0.060362):0.238482,(AmMIXTA:0.066210,(AtMYB106:0.007590, AtMYB16:0.022870):0.010639):0.066937):0.015471):0.014929):0.021327):0.019086, ((AT3G61250:0.169896,((AT3G23250:0.099634,(AT2G31180:0.066240, AtMYB13:0.088510):0.026197):0.037287,(AT3G12820:0.165349,(AT1G79180:0.078684, AtMYB58:0.078006):0.021548):0.084443):0.071728):0.021858,(AT1G74650:0.035978, ((AT5G62470:0.015616,AT3G47600:0.015864):0.012386, AtMYB30:0.029340):0.015381):0.253646):0.013102):0.032852); 3. Bootstrap consensus of weighted neighbor joining trees identified as in part 1 above. A total of 500 bootstrap replicates were performed. +----AT1G79180 +347.0 +479.0 +----AtMYB58 ! ! ! +---------AT3G12820 +422.0 ! ! +----AtMYB13 ! ! +371.0 +----------112.0 +372.0 +----AT2G31180 ! ! ! ! ! +---------AT3G23250 ! ! ! +-------------------AT3G61250 ! ! +----AT1G74430 ! +-----500.0 ! ! +----AT1G18710 ! +262.0 ! ! ! +----AtMYB106 ! ! ! +358.0 ! ! +492.0 +----AtMYB16 ! ! ! ! +104.0 +---------AmMIXTA ! ! ! ! ! ! +----AT3G47600 +-86.0 ! ! +249.0 ! ! ! ! +228.0 +----AT5G62470 ! ! ! ! ! ! ! ! ! +499.0 +---------AtMYB30 ! ! ! ! ! ! +-32.0 +--------------AT1G74650 ! ! ! ! ! ! ! ! +---------AtMYB29 ! ! ! ! +500.0 ! ! ! ! ! ! +----AT5G07700 ! ! ! ! ! +273.0 ! ! ! ! +428.0 +----AT5G61420 ! ! ! ! ! ! ! ! ! ! ! ! +----AT1G18570 ! ! ! +-71.0 +-----477.0 ! ! ! ! +----AT1G74080 ! ! ! ! ! ! ! ! +---------AT5G54230 ! +-32.0 +-----352.0 ! ! ! +----AtMYB102 ! ! +493.0 ! ! +----AT4G28110 ! ! ! ! +----AT3G02940 ! ! +-----480.0 ! ! ! +----AT5G16770 ! ! ! +-30.0 ! +138.0 +----AT1G34670 ! ! ! ! ! +232.0 ! ! ! ! ! ! +----ZmB2 ! ! ! ! +347.0 ! ! +-----130.0 ! +----AT5G10280 ! ! ! +276.0 ! ! ! +----AtMYB53 ! ! ! ! ! +-------------------AtMYB39 ! ! ! ! +----AT5G12870 ! ! +----------497.0 ! ! ! +----AT3G08500 ! ! ! ! ! +281.0 +---------AtMYB61 ! ! ! ! +391.0 ! ! ! ! ! ! +----AT5G26655 ! ! ! ! ! +265.0 ! ! ! +240.0 +----AT4G01680 ! ! ! ! ! ! +332.0 ! +----AT1G63910 ! ! ! ! +-----271.0 ! ! ! ! +----AT3G12720 ! ! ! ! +-46.0 ! ! ! +----AtMYB18 ! ! ! ! ! +366.0 ! ! ! ! +----------494.0 +----AT5G52260 ! ! ! ! ! ! ! +-----118.0 +---------AT3G48920 ! ! ! ! ! ! +----AtMYB20 ! ! ! +455.0 ! ! ! +319.0 +----AT5G16600 ! ! ! ! ! ! ! ! +322.0 +---------AT5G14340 ! ! ! ! ! ! ! +-----316.0 +--------------AT5G62320 ! ! ! ! ! +-------------------PhpaMYB2 ! ! ! ! +----AT5G23000 ! ! +----------411.0 ! ! ! +----AT2G36890 ! ! +497.0 ! ! ! ! +--------------AT4G37780 ! ! ! ! ! ! ! ! +320.0 +----AT5G65790 ! ! ! ! +387.0 ! +---------------226.0 +195.0 +----AT3G49690 ! ! ! ! ! +---------AtMYB36 ! ! ! ! +----AT5G56110 ! +---------------309.0 ! +----AT3G28470 ! ! +----AtGL1 ! +--------------------500.0 ! ! +----AT5G14750 ! ! ! ! +----ZmPL1 ! ! +500.0 ! ! +-----365.0 +----ZmC1 +214.0 ! ! ! ! ! +254.0 ! +---------AtMYB123 ! ! ! ! ! ! ! ! ! +218.0 +----AT1G66370 ! ! ! ! ! ! +144.0 ! ! ! ! ! ! ! +----AtMYB75 ! ! ! ! ! ! +459.0 ! ! ! ! ! ! ! ! +----AtMYB90 ! ! ! +194.0 +500.0 +230.0 ! ! ! ! ! +----AT1G66380 ! ! ! ! ! ! ! ! ! +--------------PehyAN2 ! ! +120.0 ! ! ! ! ! +------------------------AT3G13540 ! ! ! ! ! ! ! ! +----ZmP1 ! ! ! ! +500.0 ! ! ! ! +361.0 +----ZmP2 ! ! ! ! ! ! ! ! ! ! +408.0 +---------OsP ! ! ! ! ! ! ! ! ! ! ! ! +---------OsIF ! ! ! ! ! +194.0 ! ! ! ! ! ! +----ZmIF25 ! ! +182.0 +----------465.0 +446.0 ! ! ! ! ! +----ZmIF35 ! ! ! ! ! ! ! ! ! ! +----AtMYB12 ! ! ! ! ! +378.0 ! ! ! ! +-----364.0 +----AtMYB11 ! ! ! ! ! ! ! ! ! +---------AT5G49330 ! ! ! ! ! ! ! ! +----AT4G38620 ! ! ! ! +299.0 ! ! ! ! +198.0 +----AT2G16720 ! ! ! ! ! ! ! ! ! +--------------------484.0 +---------AtMYB3 ! ! ! ! +456.0 +-84.0 +--------------AT4G34990 ! ! ! ! ! ! +----AtMYB118 ! ! ! +---------------458.0 ! ! ! ! +----AT3G01530 ! ! ! ! ! ! ! ! +---------AT1G48000 ! ! ! +450.0 +287.0 ! ! ! ! ! ! ! +----AT5G49620 ! ! ! ! ! +179.0 +467.0 ! ! ! ! ! ! ! +----AT3G06490 ! ! ! ! ! ! ! ! ! ! ! +285.0 +--------------AtMYB2 ! ! ! ! ! ! ! ! ! ! +----AT1G25340 ! ! +----------451.0 +----------483.0 ! ! ! +----AT1G68320 ! ! ! ! ! ! +----AT4G13480 ! ! ! +500.0 ! ! ! +344.0 +----AT3G24310 ! ! ! ! ! ! ! ! ! +---------AT3G30210 ! ! +----------369.0 ! ! ! +----AT3G46130 ! ! ! +500.0 ! ! +359.0 +----AT5G59780 ! ! ! ! ! +---------AT3G53200 +264.0 ! ! ! ! +----AT3G11440 ! ! ! +-----500.0 ! ! ! ! +----AT5G06100 ! ! ! +209.0 ! ! ! ! ! +----AT5G55020 ! ! ! ! ! +482.0 ! ! ! ! +276.0 +----AT4G26930 ! ! ! +263.0 ! ! ! ! ! ! +---------AtMYB101 ! ! ! ! ! ! ! +-------------------------265.0 ! +----AT2G26950 ! ! ! +----------218.0 ! ! ! +----AT2G26960 ! ! ! ! ! +------------------------AT3G60460 ! ! ! ! +---------AtMYB1 ! ! +417.0 ! ! ! ! +----AT3G55730 ! ! ! +335.0 +236.0 ! +264.0 +----AT2G39880 ! ! ! ! ! ! ! ! ! ! +----AtMYB44 ! ! ! ! ! +489.0 ! ! ! +235.0 +479.0 +----AT3G50060 ! ! ! ! ! ! ! ! ! ! ! +---------AT2G23290 ! ! ! ! ! ! ! +------------------------------278.0 +-------------------ChreMYB ! ! ! ! ! ! +----AT1G26780 ! ! ! +-----500.0 ! ! ! ! +----AT1G69560 ! ! +-----495.0 +448.0 ! ! +----AtMYB52 ! ! ! ! +426.0 ! ! ! +312.0 +----AT1G73410 ! ! ! ! ! ! ! +---------AT4G33450 ! ! ! ! ! ! +----AT1G14350 ! ! +-------------------------------------------------------500.0 ! ! +----AT2G02820 ! ! ! ! +----AT5G11050 ! ! +498.0 ! ! +-----272.0 +----AT5G58850 ! ! ! ! ! ! ! +---------AT4G18770 ! +---------------------------------------------372.0 ! ! +---------AT5G40360 ! ! +393.0 ! ! ! ! +----AT2G25230 ! +268.0 +499.0 ! ! +----AtMYB22 ! ! ! +--------------AT3G27780 ! ! +----PCMYB5 ! +----------480.0 ! ! +----PCMYB3 ! ! +--------------------------------------------------448.0 +--------------PCMYB2 ! ! ! ! +----PCMYB4 +296.0 +466.0 ! ! +----PCMYB1 +211.0 +---------PhpaPCMYB 4. Majority-rule consensus of 8000 trees from Bayesian analysis (Huelsenbeck and Ronquist 2001) using the WAG model of proein evolution (Whelan and Goldman 2001) and gamma distributed rates across sites. The complete set of trees sampled by the Markov chain are availble upon request from E.L. Braun 50% Majority-rule consensus of 8000 trees /--- PCMYB1(1) /-100--+ | \--- PCMYB4(4) | /------------------------------84-------------------------------+ /--- PCMYB3(3) | | /100+ | | | \--- PCMYB5(5) | \44+ | \------- PhpaPCMYB(6) | +-------------------------------------------------------------------------- PCMYB2(2) | | /---------------------------------------------------------------- ChreMYB(7) | | | | /--- PhpaMYB2(8) | | /99-+ | | | \--- AT5G14340(39) | | /68+ | | | | /--- AT5G16600(40) | | | \100+ | | /-----97------+ \--- AtMYB20(95) | | | | | | | \---------- AT5G62320(41) | | | | | | /--- AT5G12870(15) | | | /---100---+ | | | | \--- AT3G08500(84) | | | | | | | | /--- AT4G01680(18) | | /86+ /44-+ /55-+ | | | | | | | \--- AT5G26655(19) | | | | | | /39+ | | | | | | | \------- AT3G12720(20) | | | | /77+ \31+ | | | | | | \---------- AtMYB61(103) | | | | | | | | | | | \----------------- AT1G63910(16) | | | \89-+ | | | | /------- AT5G52260(17) | | /50+ | | | | | | \----100-----+ /--- AT3G48920(86) | | | | \97-+ | | | | \--- AtMYB18(104) | | | | | | | | /------- AT5G10280(35) | | | | | | | | | /50+ /--- AtMYB53(99) | | /52-+ | | \76-+ | | | | | | \--- AtMYB39(109) | | | | \-------58-------+ | | | | | /--- AT1G34670(36) | | | | \--55--+ | | | | \--- ZmB2(119) | | | | | | | | /--- AT3G02940(31) | | | \------------99------------+ | | | \--- AT5G16770(32) | | | | | | /--- AT1G18570(46) | | /22+ /--92--+ | | | | | \--- AT1G74080(47) | | | | | | | | | 100+ /--- AT5G07700(49) | | | | | | /46-+ | | | | | | | \--- AtMYB29(100) | | | | | 100+ | | | | | \------- AT5G61420(50) | | | | /59-+ | | | | | | /--- AtMYB16(116) | | | | | | /31-+ | | | | | | | \--- AtMYB106(117) | | | \-------67-------+ \-47--+ | | /56+ | \------- AmMIXTA(118) | | | | | | | | | | /--- AT1G74430(51) | | | | \-----100-----+ | | | | \--- AT1G18710(52) | | | | | | | | /--- AT4G28110(33) | | | | /96-+ | | | | | \--- AtMYB102(108) | | | | /-----90-----+ | | | | | \------- AT5G54230(34) | | | | | | | | | | /--- AT3G28470(48) | | | \-------60-------+ /-----62------+ | | | | | \--- AT5G56110(57) | | | | | | | /19-+ | | /--- AT5G23000(53) | | | | 100+ /---89----+ | | | | | | \--- AT2G36890(54) | | | | | | | | | | | | /--- AT3G49690(55) | | | | \100+ /82-+ | | | | | | \--- AT5G65790(56) | | | | | /99+ | | | | | | \------- AT4G37780(85) | | | | \98+ | | | | \---------- AtMYB36(101) | | | | | | | | /----------------- AT3G61250(37) | | | | | | | /39+ | | /--- AT2G31180(42) | | | | \----------73----------+ /---64----+ | | | | | | \--- AtMYB13(105) | | | | | | | | | | \100+ /---------- AT3G23250(43) | | | | | | | | | | | | /--- AT1G79180(44) | | | | \45+ /38-+ | | | | | | \--- AtMYB58(110) | | | | 100+ | | | | \------- AT3G12820(45) | 100+ | | | | | | | /---------- AT3G47600(22) | | | | | | | | | | \---------------100---------------+ /------- AT5G62470(23) | | | | | | | | | | \48+ /--- AT1G74650(24) | | | | \63-+ | | | | \--- AtMYB30(102) | | | | | | | | /--- AT5G14750(21) | | | | /------100-------+ | | | | | \--- AtGL1(97) | | | | | | | | | | /---------- AT1G66380(25) | | | | | | | | | | | | /--- AT1G66370(26) | | | /72+ /40-+ /94+ /31-+ | | | | | | | | | | \--- AtMYB75(111) | | | | | | | | \59+ | | | | | | | /100+ \------- AtMYB90(112) | | | | | | | | | | | | | | | | | \------------- PehyAN2(113) | | | | | | \48+ | | | | | /79+ | /------- AtMYB123(27) | | | | | | | | | | | | | | | | \---70----+ /--- ZmC1(114) | | | | | | | \100+ | | | | | | | \--- ZmPL1(115) | | | | | | | | | | | | | \------------------------ AT3G13540(38) | | | | | | | | | | | | /------------- AT5G49330(83) | | | | | /41+ | | | | | | | | | /--- ZmP1(122) | | | | | | | | /90-+ | | | | | | | /61-+ | \--- ZmP2(123) | | | | | | | | | /98+ | | | | | | | | | | \------- OsP(124) | | | | | | | | | | | | | | | | | | \95+ /--- ZmIF25(125) | | | | | | | | | /96-+ | | | | | | \---100---+ | | \--- ZmIF35(126) | | | | | | | \57+ | | | | \-------80-------+ | \------- OsIF(127) | | | | | | | | | /83-+ | | /--- AtMYB12(120) | | | | | | \-----65------+ | | | | | | \--- AtMYB11(121) | | | | | | | | | | | | /--- AT2G16720(28) | | | | | | /80-+ | | | | | | | \--- AT4G38620(30) | | | | | | /99+ | | | | | | | \------- AT4G34990(29) | | | | | \--------99---------+ | | | | | \---------- AtMYB3(96) | | | | | | | | | | /--- AT3G06490(58) | | | | | /83-+ | | | | | | \--- AT1G48000(60) | | | | | /98+ | | | | | | \------- AT5G49620(59) | /45-+ | | | /42+ | | | | | | | \---------- AtMYB2(107) | | | | | | /54-+ | | | | | | | | /--- AT3G01530(63) | | | | | | | \---100---+ | | | | | | 100+ \--- AtMYB118(98) | | | | | | | | | | | | | | | | /--- AT1G68320(61) | | | | /87+ | | \-----99------+ | | | | | | | | \--- AT1G25340(62) | | | | | | | | | | | | | | | | /--- AT4G13480(64) | | | | | | \-------------100-------------+ /--98--+ | | | | | | | | \--- AT3G24310(65) | | | | | | | | | | | | | | | /65+ /--- AT3G46130(67) | | | | | | | | | /99-+ | | | | | | | | | | \--- AT5G59780(68) | | | | | | \--47--+ 100+ | | | | | | | \------- AT3G53200(87) | | | | | | | | | | | | | \------------- AT3G30210(66) | | | | | | | | | | /100+ | /--- AT5G55020(9) | | | | | | | /74-+ | | | | | | | | \--- AT4G26930(10) | | | | | | | /75+ | | | | | | | | | /--- AT2G26960(13) | | | | | | | | \76-+ | | | | | | | /49+ \--- AT2G26950(14) | | | | | | | | | | | | | | | | | \---------- AtMYB101(106) | | | | | | \-------------------78-------------------+ | | | | | | | /--- AT5G06100(11) | | | | | | \---98----+ | | | | | | \--- AT3G11440(12) | | | | | | \68+ | | | \--------------------------------------------------------- AT3G60460(88) | | \57+ | | | /--- AT2G39880(71) | | | /73-+ | | | | \--- AT3G55730(72) | | | /-94--+ | | | | \------- AtMYB1(91) | | | | | | | | /--- AT1G73410(79) | | | /41-+ /94-+ | | | | | | \--- AtMYB52(94) | | | | | /39+ | | | | | | \------- AT4G33450(82) | | | | 100+ | | | | | /--- AT1G26780(80) | | \--------------------79---------------------+ \-100--+ | | | \--- AT1G69560(81) | | | | | | /--- AT3G50060(73) | | | /87-+ | | | | \--- AtMYB44(93) | | \---99----+ | | \------- AT2G23290(74) | | | | /--- AT1G14350(69) | \------------------------------100------------------------------+ | \--- AT2G02820(70) | | /------- AT5G40360(75) | | | 100+ /--- AT2G25230(89) | | \100+ | /80+ \--- AtMYB22(92) | | | | /90-+ \---------- AT3G27780(76) | | | | | \------------- AT4G18770(90) \-------------------------98--------------------------+ | /--- AT5G58850(77) \-----100-----+ \--- AT5G11050(78) 5. References Braun EL, Grotewold E (1999a) Newly discovered plant c-myb-like genes rewrite the evolution of the plant myb gene family. Plant Physiol 121: 21-24 Bruno WJ, Socci ND, Halpern AL (2000) Weighted neighbor joining: a likelihood-based approach to distance-based phylogeny reconstruction. Mol Biol Evol 17: 189-197 Dias AP, Braun, EL, McMullen, MD, Grotewold E (2003) Recently duplicated maize R2R3 Myb genes provide evidence for distinct mechanisms of evolutionary divergence after duplication. Plant Physiol 131: 610-620 Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenetic trees. Bioinformatics 17: 754-755 Whelan S, Goldman N (2001) A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach. Mol Biol Evol 18: 691-699